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HPC User Applications

Software available at INSPEM HPC

Computational Fluid Dynamics

  • OpenFOAM 

 

Computational Statistics / Data Science

  • R / R Studio Server

 

Network Simulation

  • OM NeT++
  • NS 2 / NS 3

 

Computational Chemistry & Computational Physics

  • NWChem 
  • COMSOL
  • Quantum ESPRESSO

 

Molecular Dynamics

  • GROMACS 
  • AMBER
  • CHARMM

 

Numerical Computing

  • Scilab 
  • MATLAB R2013A
  • Mathematica 9

 

Bioinformatics

  • Artemis
  • BCFtools 
  • BLAST
  • BWA
  • GATK
  • GCUA
  • Picard
  • ClustalW 
  • EasyCluster 
  • GMAP 
  • TGI-CL
  • Maker
  • Mothur
  • FastQC 
  • Bowtie 2
  • Cufflinks 
  • Velvet
  • Oases
  • TopHat 
  • SAMtools
  • FASTX-Toolkit

Updated:: 08/09/2017 [kathiresan]

MEDIA SHARING

INSTITUTE FOR MATHEMATICAL RESEARCH
Universiti Putra Malaysia
43400 UPM Serdang
Selangor Darul Ehsan
03-89466878
03-89466973
C1511087327